Molecular Dynamics Simulations and Elastic Network Analysis of Ribose-binding protein Conformational

来源 :第六届全国生物信息学与系统生物学学术大会暨国际生物信息学前沿研讨会 | 被引量 : 0次 | 上传用户:zhaoxin1987212
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  Background: The ribose-binding protein (RBP) from Escherichia coli is one of the representative structures of the periplastic binding proteins.Biological responses are typically mediated by ligand-induecd conformational changes in which the ribose binding event is coupled to a hinge-bending motion that brings together two domains in a closed form.The RBP has been crystallized in the open (PDB ID: 1URP) and the closed conformation (PDB ID: 2DRI) and the structures differ by a 41.3° rotation of the N-terminal domain relative to the C-terminal domain.
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