Aquatic ecosystems are the key to development of the aquaculture,Marine as well as inland for social and economic development of the world.The plankton ecosystems are important for aquatic productions.Considering the biogeochemical response of plankton ecosystems,it is necessary to adopt environmental management plans for use of marine water for aquaculture production based on plankton ecosystems.Aquaculture is an innovative tool in the urban and also in rural agriculture to use and reuse water as well as coastal and brackish water.Aquaculture has emerged as one of the most promising industries in the world with considerable growth potential and it is expected to contribute about a quarter to the global fishery harvest in year 2000.Availability of plankton ecosystems are constraints in a aquaculture farming and marine ecosystem.Aqua farming has a multidimensional context in perspective marine food growth.It is tool for utilizing coastal land and water more economically and optimally to increase marine productivity,of both,land and water,through sustainable marine aquatic management.The countries in the Asia-Pacific region have vast and varied aqua farming resources Often these are the main source of food production in this region.An attempt has been made in this paper to develop the environmental management plan for marine aquaculture and aqua food production based on biogeochemical response of plankton ecosystems using innovative technologies from Indian experience.The paper also evaluates air-sea exchanges of CO2 and marine water quality criteria for increasing aquatic productivity.