Insight into the Docking Pose of Dehydroascorbate: A Molecular Docking and Molecular Dynamics Simula

来源 :第十二届全国量子化学会议 | 被引量 : 0次 | 上传用户:sworc
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
  The reduction of dehydroascorbate(DHA)to ascorbic acid(AA)is a vital cellular function.The omega-class glutathione transferases(GSTs)catalyze several reductive reactions in cellular biochemistry,including DHA reduction.In humans,GSTO1-1 and GSTO2-2 are proved to be significant DHA reductase(DHAR)activity1.The structure of a human GSTO1-1(PDB ID: 3VLN)has been determined at 1.7(A)resolution in complex with the reaction product AA,which unexpectedly binds in the G-site,where the glutamyl moiety of GSH binds.In this work,molecular docking and molecular dynamics simulations were carried out to obtain the complex of GSTO-GSH-DHA and explore the conformational change of this complex.AutoDock4.2 software package2 was used to dock DHA into the active site of GSTO1-1.Then 40ns MD simulation was carried out by employing AMBER113.ff99SB force field4 was used here.Root mean square deviation(RMSD)was shown in Figure 1.By using clustering analysis in AmberTools1.5,the representative structure was obtained and was shown in Figure 2.This complex can be used as the starting structure of the reaction of reduction of dehydroascorbate(DHA)to ascorbic acid(AA).
其他文献
The general time-dependent expressions including the mode-mixing and vibronic coupling effects are formulated to calculate one/two-photon absorption,emission,circular dichroism and resonance Raman/hyp
会议
In our previous work1,a rational novel formula of electrostatic solvation energy for nonequilibrium polarization has been derived by introducing the method of constrained equilibrium state 2 in the fr
会议
Classical LSDA predicts wrong results about gap for the Mott-Hubbard insulator and charge ordering systems such as Fe3O4,LDA+U and HSE methods are proved to be quite successful in correcting LDA appro
会议
Density Functional Theory(DFT)calculations at IDSCRF-B3LYP/DGDZVP level have been performed to inverstigate the reaction mechanisms of Ni-catalyzed [2+2+2] cycloaddition reactions between carboryne an
会议
Shannon entropy and Fisher information are key quantities in information theory.These quantities involve only the electron density and its gradient,so,according to density functional theory,they are n
会议
The electrostatic interaction between solute and solvent molecules will produce the electronic polarization which manifests ultrafast processes in electronic excitation and electron transfer.It means
会议
Metal-catalyzed hydroboration of alkynes usually proceed in a cis-addition manner.Applications of trans-hydroboration of terminal alkynes via a vinylidene intermediate are limited.trans-hydroboration
会议
An ab initio multiconfigurational(CASPT2//CASSCF)approach has been employed to map radiative and nonradiative relaxation pathways for a cyclam-methylbenzimidazole fluorescent sensor and its complexes
会议
Photolyase enzyme absorbs blue light through an electron transfer reaction to repair the cyclobutane pyrimidine dimer(CPD)in DNA damaged by exposure to ultraviolet light,but an improved understanding
会议
Density functional theory(DFT)calculations were used to study the mechanisms for hydrogenation of carbon dioxide catalyzed by the tetraphos-ligated(PP3: P(CH2CH2PPh2)3)cobalt complexes.The monohydride
会议