Genetic Diversity and Phylogenetic Status of Mitochondrial DNA Control Region in Diandongnan Buffalo

来源 :2011中国肉牛选育改良与产业发展国际研讨会 | 被引量 : 0次 | 上传用户:mike595959
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  The aim of this study is to shed light on the genetic diversity and phylogenetic status of Diandongnan buffalo (Bubalus bubalis).Through polymerase chain reaction (PCR) and direct sequence,29 mtDNA D-loops were sequenced.The lengths of mtDNA D-loops ranged from 910~917 bp.Combined with five mtDNA D-loops of Diandongnan buffalo from GenBank, 20 haplotypes were defined showing that haplotype diversity, nucleotide diversity and average number of nucleotide differences were 0.877±0.053, 0.01091±0.00465 and 9.865±21.419, respectively.Mismatch distribution analysis showed that extant Diandongnan buffalo population lasts a stable population with abundant diversity.A N-J tree was constructed by gathering the mtDNA D-loop sequences involving in Egyptian, Indian, Mediterranean, Brazilian, and Chinese buffalo breeds, which revealed two distinct clades (swamp-type and river-type clades), and all the Diandongnan buffalo clustered together with swamp-type clade and split from river-type buffalo including Indian, Egyptian and Mediterranean buffalo.Diandongnan buffalo further split two sub-clades, SW-A and SW-B in accordance with the cases of other Chinese buffalo breeds.Despite Yunnan province was located in the southwest border of China, a historic commercial entrance, no Indian river-type mitochondrial haplotypes were found in Diandongnan buffalo indicating that Diandongnan buffalo hadn,t yet been undergone gene introgression from Indian buffaloes and Diandongnan buffalo belongs to pure swamp-type without Indian river-type haplotypes supporting the hypothesis of China or Southeast Asian origin.
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