Understanding the folding and stability of a designed WW domain protein with replica exchange molecu

来源 :第七届国际分子模拟与信息技术应用学术会议 | 被引量 : 0次 | 上传用户:marina12345
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
WW domain proteins are usually regarded as simple models for understanding the folding mechanisrn of β-sheet.CC45 is an artificial protein that is capable of folding into the same structure as WW domain.In this article, the replica exchange molecular dynamics simulations are performed to investigate the folding mechanism of CC45.The analysis of thermal stability shows that β-hairpin 1 is more stable than β-hairpin 2 during the unfolding process.Free energy analysis shows that the unfolding of this protein substantially proceeds through solvating the smaller β-hairpin 2, followed by the unfolding of β-hairpin 1.We further propose the unfolding process of CC45 and the folding mechanism of two β-hairpins.These results are similar to the previous folding studies of formin binding protein 28 (FBP28).Compared with FBP28, it is found that CC45 has more aromatic residues in N-terminal loop, and these residues contact with C-terminal loop to form the outer hydrophobic core, which increases the stability of CC45.Knowledge about the stability and folding behaviour of CC45 may help in understanding the folding mechanisms of the β-sheet and in designing new WW domains.
其他文献
RNA-binding proteins play critical roles in various cellular processes.Computational approaches to identify RNA-binding proteins have an important guiding role in designing experiments in RBPome.In th
会议
CMG2-Fc is a fusion protein composed of the extracellular domain of capillary morphogenesis protein 2 (CMG2) and the Fc region of human immunoglobulin G;CMG2-Fc neutralizes anthrax toxin and offers pr
会议
A series of oxime ether acylhydrazone derivative (3a-3s) were synthesized and fully characterized by 1H NMR and 13C NMR.The crystal structure of compound 3b was further determined by single-crystal X-
The organophosphorous hydrolase (PTE) from Brevundimonas diminuta is capable of degrading extremely toxic organophosphorous compounds with a high catalytic turnover and broad substrate specificity.Alt
Owing to its unique function to release the progeny virus particles from the surface of an infected cell, neuraminidase has drawn special attention for developing new drugs to treat influenza viruses.
The 3D chromatin structure modeling by chromatin interactions derived from Hi-C experiments is significantly challenged by the intrinsic sequencing biases in these experiments.Conventional modeling me
会议
For biosynthesis of bacillamide C by Bacillus atrophaeus C89 associated with South China sea sponge Dysidea avara, it is hypothesized that decarboxylation from L-tryptophan to tryptamin e could be per
会议
The interaction of copper compounds with DNA is significant in a variety of biological processes [1].A series of six molecular dynamics simulations were performed to investigate the interaction betwee
会议
The thermophilic intracellular protease (PH1704) from Pyrococcus horikoshii that functions as an oligomer (hexamer or higher forms) has proteolytic activity and remarkable stability.PH1704 is classifi
Background: Toll-like receptor 9 (TLR9) recognises unmethylated CpG DNA and activates a signalling cascade, leading to the production of inflammatory cytokines such as TNF-α, IL-1, IL-6 and IL-12 via
会议