Dynamics of major picoplankton groups, Synechococcus (Syn), Prochlorococcus (Pro), picoeukaryotes (Euk) and heterotrophic bacteria (Bact) was investigated by flow cytometry for the first time in the Nansha Islands area in the South China Sea. Averaged over the whole investigation area, depth-weighted integrated cell abundance (DWA) of Syn, Pro, Euk and Bact was 1.6 (0.4-5.7)×103, 5.4 (0.1-7.3)×104, 0.7 (0.2-2.2)×103, and 2.3 (1.4-3.2)×105 cells/mL respectively. Picoautotrophic cell abundance was low in the northwest part of the Nansha Islands where surface water temperature was low and the upper mixed layer was shallow. Concurrently, a surface maximum vertical distribution pattern was observed in this area. While in the southeast and east zones where temperatures were relatively higher and nitraclines were deeper, picoplankton is abundant and a subsurface maximum around 50-75 m is observed. Coupling of horizontal and vertical distribution patterns of picoplankton abundance and hydrological status wa Dynamics of major picoplankton groups, Synechococcus (Syn), Prochlorococcus (Pro), picoeukaryotes (Euk) and heterotrophic bacteria (Bact) was investigated by flow cytometry for the first time in the Nansha Islands area in the South China Sea. Averaged over the whole (DWA) of Syn, Pro, Euk and Bact was 1.6 (0.4-5.7) × 103, 5.4 (0.1-7.3) × 104, 0.7 (0.2-2.2) × 103, and 2.3 (1.4-3.2) × 105 cells / mL respectively. Picoautotrophic cell abundance was low in the northwest part of the Nansha Islands where surface water temperature was low and the upper mixed layer was shallow. Concurrently, a surface maximum vertical distribution pattern was observed in this area. While in the southeast and east zones where temperatures were relatively higher and nitraclines were deeper, picoplankton is abundant and a subsurface is around 50-75 m is observed. Coupling of horizontal and vertical distribution patterns of picoplankton abundance and hydr ological status wa