Seroprevalence and evolutionary dynamics of genotype 4 hepatitis E virus in Shandong Province,China

来源 :World Journal of Gastroenterology | 被引量 : 0次 | 上传用户:lahlyg
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
AIM:To investigate the seroprevalence and evolutionary dynamics of hepatitis E virus(HEV)and assess the ancestor of HEVs in China’s Shandong Province.METHODS:A total of 2028 serum,60 fecal and 82 bile samples were collected from the general human population,patients and swine,respectively.This seroepidemiological study was conducted using an immunnosorbent assay and HEV RNA was detected by the reverse transcription-nested polymerase chain reaction(RTnPCR)method.Complete genome sequences of the prevalent strains(CH-YT-HEV01,CH-YT-HEV02 and CHYT-sHEV01)were determined,and the sequences were analyzed phylogenetically.In addition,the evolutionary dynamics of three HEV isolates were determined using the framework of coalescent analysis in the program package BEAST,and the time of the most recent common ancestors(TMRCAs)of China-indigenous genotype4 HEV isolates was calculated.RESULTS:The overall viral burden in the general human population was 0.1%,and the positive rates of anti-HEV IgG and IgM in the serum specimens were25.1%(509/2028)and 2.3%(51/2028),respectively.In addition,IgG positivity increased with age.The phylogenetic analysis based on the full-length nucleotide sequences showed that the strain CH-YT-HEV02was directly related to CH-YT-sHEV01 with a 94%identity,suggesting that they were involved in crossspecies transmission.The isolate CH-YT-HEV01 was close to HB-3 and CHN-SD-sHEV with a bootstrap value of 100%,sharing a 96.1%-96.4%identity with each other.Surprisingly,the HB-3 strain was a representative strain prevalent in swine in Hubei,and the isolate CHNSD-sHEV was obtained from swine in Shandong in a previous report.TMRCA for the clade of CH-YT-HEV01and HB-3 was 2003,which was consistent with the TMRCA for the clade of CHN-SD-sHEV and HB-3,and they were both earlier than the TMRCA for the clade of CHYT-HEV01 and CHN-SD-sHEV(2004).CONCLUSION:The strains CH-YT-HEV01,CHN-SDsHEV and HB-3 are involved in trans-regional transmission,and the ancestors of HEVs in Shandong come from Hubei Province. AIM: To investigate the seroprevalence and evolutionary dynamics of hepatitis E virus (HEV) and assess the ancestor of HEVs in China’s Shandong Province. METHODS: A total of 2028 serum, 60 fecal and 82 bile samples were collected from the general human population, patients and swine, respectively. This seroepidemiological study was conducted using an immunosorbent assay and HEV RNA was detected by the reverse transcription-nested polymerase chain reaction (RTnPCR) method. Complete genome sequences of the prevalent strains (CH-YT-HEV01, CH- YT -HEV02 and CHYT-sHEV01) were determined, and the sequences were analyzed phylogenetically. In addition, the evolutionary dynamics of three HEV isolates were determined using the framework of coalescent analysis in the program package BEAST, and the time of the most recent common ancestors (TMRCAs) of China-indigenous genotype 4 HEV isolates was calculated .RESULTS: The overall viral burden in the general human population was 0.1%, and the positive rates of anti-HEV IgG a nd IgM in the serum specimens were 25.1% (509/2028) and 2.3% (51/2028), respectively. In addition, IgG positivity increased with age. The phylogenetic analysis based on the full-length nucleotide sequences showed that the strain CH-YT-HEV02 was directly related to CH-YT-sHEV01 with a 94% identity, suggesting that they were involved in crossspecies transmission. The isolate CH-YT-HEV01 was close to HB-3 and CHN-SD-sHEV with a bootstrap value of 100%, sharing a 96.1% -96.4% identity with each other. Surprisingly, the HB-3 strain was a representative strain prevalent in swine in Hubei, and the isolate CHNSD-sHEV was obtained from swine in Shandong in a previous report . TMRCA for the clade of CH-YT-HEV01 and HB-3 was 2003, which was consistent with the TMRCA for the clade of CHN-SD-sHEV and HB-3, and they were both earlier than the TMRCA for the clade of CHYT -HEV01 and CHN-SD-sHEV (2004) .CONCLUSION: The Sections CH-YT-HEV01, CHN-SDsHEV and HB-3 are involved in trans-regional transmission, and the ancestors of HEVs i nShandong come from Hubei Province.
其他文献
[目的]了解周口市降氟改水措施落实情况,动态观察降氟改水措施后的预防效果,为指导以后地方性氟中毒防治工作提供科学依据。[方法]按照国家《地方病防治项目技术方案》进行,
读者是图书馆存在的价值所在,在计算机和通信技术迅猛发展的条件下,读者在日渐流失。分析高校潜在读者存在的形式和原因,利用web2.0技术提升图书馆服务理念,运用多种服务手段
1病历摘要女,29岁。自诉因食用海鲜出现头晕、呕吐、浑身瘙痒,于社区卫生院,诊为食物过敏,予催吐及抗组胺药处理,1 h后症状缓解。回家后,自觉胃部不适,自服藿香正气水,约15 m
知识经济的时代知识是经济发展的关键要素,绩效考评是人力资源管理的核心,是激励机制的外部表现,是现代企业图书馆人力资源管理制度的基础。指出绩效考评与激励机制存在着紧
目的:全面、准确了解通江县手足口病流行病学及病原学分布特征,给上级主管部门制订并落实有效的防控策略和措施提供科学依据。方法:采用Excel2003进行数据处理,采用描述流行
图书馆在新旧图书馆搬迁、馆内格局调整、图书编目、图书入库、图书借阅的过程中产生图书丢失、图书错库、图书漏编、图书信息不一致等问题。这些问题将给读者和图书馆管理者
1资料患者1,男,36岁,体质量65kg,2008年1月因腰背部搔痒剧烈来我院就诊。经检查诊断为皮肤淀粉样变,给予复方倍他米松注射液1支(商品名:得保松,比利时先灵葆雅制药厂,批号6BB
岛屿地貌单元是珠江三角洲发育演变过程中的沉积核心,研究其消能机制,对理解河口动力过程及三角洲发育演变有重要意义。通过建立岛屿地貌单元的湍流能耗特性概化物理模型,基
近些年来我国大力发展水利工程事业,对病险水库的加固管理有了更高的要求。但是水库在建设阶段,存在标准低或者水库设施老化的现象,进而出现了坝体渗透的现象,无法在实践中发
条子泥蓄淡水库修建在粉砂地基上,该场地土层厚度大、密实性差、强度较低、渗透性较强,针对库床地基土较强渗透性造成的盐侵、渗漏和库床突涌等工程问题,提出在水库防渗体下