Identification and bioinformatics analysis of lactate dehydrogenase genes fromEchinococcus granulosu

来源 :亚太热带医药杂志(英文版) | 被引量 : 0次 | 上传用户:xiaoxiao_666
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
Objective:To identify full length cDNA sequence of lactate dehydrogenase(LDH) from adultEchinococcus granulosus (E. granulosus) and to predict the structure and function of its encoding protein using bioinformatics methods.Methods: With the help ofNCBI, EMBI, Expasy and other online sites, the open reading frame (ORF), conserved domain, physical and chemical parameters, signal peptide, epitope, topological structures of the protein sequences were predicted and a homology tertiary structure model was created; VectorNTI software was used for sequence alignment, phylogenetic tree construction and tertiary structure prediction. Results: The target sequence was1 233 bp length with a996 bp biggestORFencoding331 amino acids protein with typicalL-LDH conserved domain. It was confirmed as full length cDNA of LDH fromE. granulosus and named asEgLDH (GenBank accession number:HM748917). The predicted molecular weight and isoelectric point of the deduced protein were3 5516.2Da and6.32 respectively. Compared withLDHs fromTaenia solium, Taenia saginata asiatica, Spirometra erinaceieuropaei, Schistosoma japonicum, Clonorchis sinensis and human, it showed similarity of 86%, 85%, 55%, 58%, 58% and 53%, respectively. EgLDH contained3putative transmembrane regions and4 major epitopes (54aa-59aa,81aa-87aa,97aa-102aa,307aa-313aa), the latter were significant different from the corresponding regions of humanLDH. In addition, someNAD and substrate binding sites located on epitopes54aa-59aa and97aa-102aa, respectively. Tertiary structure prediction showed that3 key catalytic residues105R, 165D and192H forming a catalytic center near the epitope97aa-102aa, mostNAD and substrate binding sites located around the center.Conclusions: The full length cDNA sequences of EgLDH were identified. It encoded a putative transmembrane protein which might be an ideal target molecule for vaccine and drugs.
其他文献
目的 现察手指点穴按摩联合中药湿敷治疗虚秘型便秘患者的临床疗效.方法 将60例虚秘患者分为两组,观察组30例用手指点穴按摩及中药湿敷治疗,对照组30例,按照传统方法护理,并
目的:研究分析在多发伤急诊患者抢救中实施一站式急救护理模式的效果.方法选取在本院接受治疗的多发伤急诊患者作为研究对象,选取时间段为2016年1月至2017年4月,病例数为246
目的 研究CREB1在氧诱导视网膜病变(OIR)小鼠模型视网膜新生血管形成中的表达变化,探寻视网膜新生血管形成的可能机制.方法 实验研究.选用7日龄健康清洁级C57BL/6J小鼠134只,随机分为正常对照组(67只)和OIR模型组(67只).将小鼠与哺乳母鼠共同置于(75±2)%氧环境内饲养5d后转移至正常环境中饲养5d,建立小鼠OIR模型,17日龄的OIR鼠在空气中再继续饲养4d,正常对照组在正
期刊
目的:探讨汉族人内皮型一氧化氮合酶(eNOS)基因内含子4可变数目串联重复序列插入/缺失多态性(4b/a)与2型糖尿病(T2DM)合并高尿酸血症的关系。方法:提取100例健康人(A组)、76
AIM: To study the expression of the inhibitor of apoptosis protein survivin in hepatocellular carcinoma (HCC), and its correlation with clinicopathological fact
诺思里奇效应这个名称得自1994年1月洛杉矶附近的诺思里奇大地震.地震发生之后,接收幸存伤者的医院发出伤者面临着又一轮死亡袭击:心脏病.此后数月,研究者惊奇发现,因心血管
期刊
期刊
Pinus densiflora needle extract (PDNE) is widely reported to have many pharmacological activities including antioxidant potential. However, the solvent system u