The objectives of this study are carried out a series of controlled large wave flume experiments using fine-grained sediment from the Huanghe River Delta, exploring the complete sequence of sediment behavior in the bottom boundary layer (BBL) during wave-induced liquefaction. The results show that: (1) The BBL in silty seabed is exposed to a progressive wave, goes through a number of different stages including compaction before liquefaction, sediment liquefaction, and compaction after liquefaction, which determines the range and thickness of BBL. (2) With the introduction of waves, first, the sediment surface has settled by an amount S (S=1–2 cm) in the course of wave loadings with an insufficient accumulation of pore water pressure. And a thin high concentration layer formed the near-bed bottom. (3) Once the liquefaction sets in, the liquefied sediment with an ‘orbital motion’ and the sub-liquefied sediment form a two-layer-sediment region. The range of BBL extends downwards and stopped at a certain depth, subsequently, develops upwards with the compaction process. Meanwhile, resuspended sediments diffuse to the upper water column. (4) During the dynamics process of the BBL beneath progressive waves, the re-suspended sediment increment ranked as sediment liquefaction > erosion before liquefaction > compaction after liquefaction.