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How to evaluate time-domain Green function and its gradients efficiently is the key problem to analyze ship hydrodynamics in time domain. Based on the Bessel function, an Ordinary Differential Equation (ODE) was derived for time-domain Green function and its gradients in this paper. A new efficient calculation method based on solving ODE is proposed. It has been demonstrated by the numerical calculation that this method can improve the precision of the time-domain Green function. Numerical research indicates that it is efficient to solve the hydrodynamic problems.