In this paper, the dispersion managed soliton (DMS) transmission equation is built on considering the effects of polarization mode dispersion (PMD) and filter control. The DMS transmission of filtering control in constant birefringence fibers is firstly analyzed by varitional method, from which the evolving rules of characteristical DMS parameters are obtained. Secondly, the stability of DMS transmission and its timing jitter are investigated in the random varying birefringence fibers with the conventional model of PMD. The results reveal that filter control DMS system has powerful robustness to PMD effects and DMS’s timing jitter can be decreased considerably with the help of filters.