Computational Identification of 99 Insect MicroRNAs Using Comparative Genomics

来源 :清华大学学报 | 被引量 : 0次 | 上传用户:naimiu2
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
In recent years,much effort has been made in identifying microRNA (miRNA) genes from mammals,insects,worms,plants,and viruses.Continuing the search for more miRNA genes is still important but difficult.This paper presents a computational strategy based on comparative genomics analysis.The algorithm was used to scan four invertebrate genomes,Drosophila melangoster,Bombyx mori,Apis mellifera,and Anopheles gambiae,which are either model organisms or medically/economically important insects.99 new miRNA genes were predicted from the four insect species which can be grouped into 17 miRNA gene fami-lies,of which 10 of the miRNA families are insect-specific.Sequence similarity analysis showed that 16 of the newly predicted insect miRNAs belong to the K-box,GY-box,and Brd-box miRNA families which are impor- tant participators in Notch-related pathways,To test the validity of the algorithm,39 predicted insect miRNA genes from D.Melangoster and A.mellifera were selected for further biological validation.34 (87%) pre- dicted miRNA genes' transcripts were successfully detected by reverse transcription-polymerase chain reac- tion experiments.Thus,this strategy can be used to efficiently screen for miRNA genes conserved cross species.
其他文献
西方殖民者在租界建立的"公审公廨"制度,由于是在"洋廨员"的主导下审判案件的,在许多方面参照西方国家的审判制度进行,给晚清政府传统审判模式带来了严重冲击,主要体现在对传
记者:雅各布斯博士,很高兴您能接受本刊的采访,您在人力资源开发领域①可谓"桃李满天下",那么,您是怎样理解和定义人力资源开发的?雅各布斯:不同学者对人力资源开发的定义有
比喻作为最常用的修辞手法,在俗语的构成中起着举足轻重的作用。由于俗语结构的定型性,使得俗语中的比喻具有了独特性。文章以体词性俗语为考察对象,以比喻的“三要素、四成
针对船舶、潜艇海水管路系统中阀门引起的流噪声问题,采用计算流体力学通用软件Fluent对实际使用中的通海阀内流场分布进行仿真计算,根据该可视化结果分析影响通海阀性能和产
采用传统的振动监测方法对往复式舱底泵进行了振动响应分析,有测点出现振动响应增大,有测点出现振动响应减小,按照振动响应的变化不易进行故障判别,尤其难以进行故障的定位.
针对目前电气化铁道使用的斯科特变压器和阻抗匹配变压器的缺点以及同相供电系统补偿电流实时检测方法的不足,提出了基于Y/>/▽平衡变压器的同相牵引供电系统方案.分析了Y/>/▽
商业银行经营既要追求经济效应,又必须兼顾社会效应.银行客户在办理业务时的等待时间长短,体现了银行应当承担的一类社会责任.传统的商业银行DEA效率评价研究,仅仅考虑决策单
微纳流体光波导融合了微观流体与微光学特征,能够在相同物理空间实现流体介质和微光学信息功能及结构的集成,是生物化学分析及生物传感器的关键器件。本文综述了微纳流体光波
The combination of relay networks with orthogonal frequency division multiple access (OFDMA) has been proposed as a promising solution for the next generation w
In this paper, a high-speed camera and an optical emission monitor were used to study the behavior of vapor/plasma during CO2 laser welding of SUS304 stainless