The effect of fly ash and silica fume on hydration rate and strength of cement in the early stage was studied. Contrast test was applied to the complex cementitious system to investigate the hydration rate. Combined with mechanical strength, the influence of fly ash and silica fume during the hydration process of complex binder was researched. The peak of the rate of hydration heat evolution and the mechanical strength decreased as the ratio of fly ash increased, however, as the ratio of silica fume increased, the peak of the rate of hydration heat evolution and the mechanical strength increased obviously. When the ratios of fly ash and silica fume are 10%and 5%, the peak of the rate of hydration heat evolution is the highest. At the same time 7 days of flexural and compressive strength are the highest as 8.89 MPa and 46.52 MPa, respectively. Fly ash and silica fume are the main factors affecting the hydration rate and the mechanical property.