GliomaDB:A Web Server for Integrating Glioma Omics Data and Interactive Analysis

来源 :基因组蛋白质组与生物信息学报(英文版) | 被引量 : 0次 | 上传用户:bigtim1
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
Gliomas are one of the most common types of brain cancers. Numerous efforts have been devoted to studying the mechanisms of glioma genesis and identifying biomarkers for diagnosis and treatment. To help further investigations, we present a comprehensive database named GliomaDB. GliomaDB includes 21,086 samples from 4303 patients and integrates genomic, transcriptomic, epigenomic, clinical, and gene-drug association data regarding glioblastoma multiforme (GBM) and low-grade glioma (LGG) from The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO), the Chinese Glioma Genome Atlas (CGGA), the Memorial Sloan Kettering Cancer Center Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT), the US Food and Drug Administration (FDA), and PharmGKB. GliomaDB offers a user-friendly interface for two main types of functionalities. The first comprises queries of (i) somatic mutations, (ii) gene expression, (iii) microRNA (miRNA) expression, and (iv) DNA methylation. In addition, queries can be executed at the gene, region, and base level. Second, GliomaDB allows users to perform survival analysis, coexpression network visualization, multi-omics data visualization, and targeted drug recommendations based on personalized variations. GliomaDB bridges the gap between glioma genomics big data and the delivery of integrated information for end users, thus enabling both researchers and clinicians to effectively use publicly available data and empowering the progression of precision medicine in glioma. GliomaDB is freely accessible at http://bigd.big.ac.cn/gliomaDB.
其他文献
The human brain contains billions of highly differentiated and interconnected cells that form intricate neural networks and collectively control the physical ac
上海交通大学与CERNET的渊源极深,是共建CERNET试验网最早的六所高校之一,经历了CERNET建设、发展、壮大的全过程.可以说,上海交通大学的信息化部门与CERNET一起走过了飞速发
期刊
Majority of type 2 diabetes mellitus (T2DM) patients are highly susceptible to several forms of cognitive impairments, particularly dementia. However, the under
江泽民总书记的“七一”讲话,是一篇马克思主义的纲领性文件.它不仅提出了党的建设的根本方针,同时也为新时期政权建设指明了方向.作为国家权力机关的各级人大及其常委会,只
CERNET西北地区网络中心成立于1994年,依托西安交通大学,负责接入西北地区五省区的教育科研单位,承担西北地区教育和科研计算机主干网络的运行管理,以及陕西省、西安市教育城
期刊
作为CERNET的核心节点之一,东南大学为CERNET的建设与发展做出了突出贡献.1997年,东南大学的陶军与CERNET不期而遇.在接受记者采访时,他表示,包括自己在内的高校学子,以及如
期刊
1984年出生的钱步月,如今已经是西安交通大学副教授、博士生导师.作为2000年后的新一代大学生,在西交大读本科时,通过CERNET接入的校园网已经普及,他很难想象没有网络的世界
期刊
2019 年 是 CERNET建设25周年.25年来, CERNET从无到有,从小到大,从跟随和学习国外互联网先进技术,到引领中国下一代互联网体系结构研究,参与全球I P v6规模化发展,走过了一
期刊
De novo variants (DNVs) are one of the most significant contributors to severe earlyonset genetic disorders such as autism spectrum disorder, intellectual disab
东北大学所在的沈阳市在整个东北地区处于枢纽位置,东北大学网络中心同时也是CERNET东北地区网络中心的所在地,连接东三省的高等学校和各级各类教育组织,是东北地区颇具规模
期刊