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AIM: To build up the structure of human fibrinogen receptor GPⅡb-Ⅲa, subsequently combined with its antagonist decorsin, and to investigate the interaction between decorsin and its receptor GPⅡb-Ⅲa at the molecular level. METHODS: A three-dimensional (3D) molecular model of human fibrinogen receptor GPⅡb-Ⅲa was generated by InsightⅡ, a distance geometry-based homologous modeling package. The structure of human fibrinogen receptor GPⅡb-Ⅲa was built by the InsightⅡ/Homology module using the corresponding of integrin alpha Vbeta.3 (PDB filecode 1JV2) as the template. Then the primary structures were optimized by energy minimization. Subsequently the structural model was docked with its antagonist decorsin (PDB filecode 1dec). RESULTS: A good substrate receptor interaction model was achieved. The interaction sites with decorsin converge at domain 8 (βA domain of β3 subunit) of GPⅡb-Ⅲa. The direct interatomic contacts were made between 16 GPⅡb/Ⅲa residues and 10 decorsin amino-acid residues. T
AIM: To build up the structure of human fibrinogen receptor GPⅡb-Ⅲa, subsequently combined with its antagonist decorsin, and to investigate the interaction between decorsin and its receptor GPⅡb-Ⅲa at the molecular level. METHODS: A three-dimensional (3D) molecular model of human fibrinogen receptor GPIIb-IIIa was generated by Insight II, a distance geometry-based homologous modeling package. The structure of human fibrinogen receptor GPIIb-IIIa was built by the Insight II / Homology module using the corresponding of integrin alpha Vbeta.3 The primary model was docked with its antagonist decorsin (PDB filecode 1dec). RESULTS: A good substrate receptor interaction model was achieved. The interaction sites with decorsin converge at domain 8 (βA domain of β3 subunit) of GPⅡb-Ⅲa. The direct interatomic contacts were made between 16 GPⅡb / Ⅲa residues and 1 0 decorsin amino-acid residues. T