A theoretical model for interaction of a submerged moving body with the conjugate flow in a three-layer fluid is proposed to depict the inteal flat solitary wave, which is observed in experiments conducted by the present authors. A set of coupled nonlinear algebraic equations is derived for the interracial displacements. The numerical results indicate that (a) the conjugate flow due to a two-dimensional body moving at the bottom possesses an apparent behaviour with two convex interfaces; (b) the solution satisfying the existence criterion is always unique near the relatively stable state of system. Theoretical analysis is qualitatively consistent with the experimental results obtained.