The health status of 18 sweet corn (Zea mays L. saccharata Sturt) hybrids classified to two types, collected from five areas in China, was examined by PDA method, and factors influencing seed health and relationships between seed health and field seedling emergence were studied. Seventeen fungal genera were isolated and Fusarium was the most frequently isolated. There were significant differences both in incidence of Fusarium and in percentage of infected seeds among 18hybrids. Research also showed that significant and consistent differences both in seed-borne fungal taxa and in percentage of infected seeds existed between two types of sweet corn. Sugar enhanced corn is more slightly infected than super sweet corn both in fungal taxa (13 and 16, respectively) and in percentage of infected seeds (62.0 and 79.2%, respectively).There were also significant differences both in seed-borne fungal taxa and in percentage of infected seeds among five areas. Seeds from South China were most severely infected, for there were 14 fungal genera detected and the percentage of infected seeds was highly 99.1% while those from Northwest China were slightly infected, for there were 10 fungal genera detected and the percentage of infected seeds was only 14.3%. Further research showed that there were significant negative correlations both between incidence of Fusarium and percentage of field seedling emergence and between percentage of infected seeds and percentage of field seedling emergence. Percentage of field seedling emergence could be estimated by regression equations built by regression analysis.