Fluctuating-rate model and stochastic phenotype transition of a single cell

来源 :Workshop on Mathematical and Physical Methods for Biological | 被引量 : 0次 | 上传用户:cedzyh
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
Multiple phenotypic states often arise in a single cell with different gene-expression states that undergotranscription regulation with positive feedback. Recent experiments show that, at least in E. coli, the genestate switching can be neither extremely slow nor exceedingly rapid as many previous theoretical treatments assumed. Rather, it is in the intermediate region which is difficult to handle mathematically. Under this condition,from a full chemical-master-equation description we derive a Fluctuating-rate model in which the protein copy number, for a given gene state, follows a deterministic mean-field description while the protein-synthesis rates fluctuate due to stochastic gene state switching. The simplified kinetics yields anonequilibrium landscape function, which,similar to the energy function for equilibrium fluctuation, provides the leading orders of fluctuations around each phenotypic state, as well as the transition rates between the two phenotypic states. This rate formula is analogous to Kramers? theory for chemical reactions.
其他文献
  Analysis of multicategory response data in which the multinomial dependent variable is linked to selected covariates includes several rival models. These mo
会议
  This talk addresses a chemotaxis-haptotaxis model for cancer invasion,which describes the mutual interactions between cancer cells,enzymes and extracellular
会议
  The mixture of factor analyzers (MFA) model provides a powerful tool for analyzing high-dimensional data as it can reduce the number of free parameters thro
会议
Pattern formation is a fundamental process in embryogenesis and development. In his seminal paper half a century ago, Turing proposed a mechanism for spontaneou
会议
  A new algorithm is motivated by the similarities and differences between the Metropolis-Hastings (MH) algorithm and sampling importance/ resampling (SIR). B
会议
Bacterial biofilms are surface-associated, multicellular, morphologically complex microbial communities. Much work has focused on factors affecting surface adhe
会议
Cross-diffusion system is an important class of reaction-diffusion problems. At the individual level, the basic underlying assumption for cross-diffusion is tha
会议
  Descriptive analysis of sample survey data estimates means, totals and their variances in a design framework (see for example Haslett, 1985). When analysis
会议
  Representative Points (RP) have been considered by many people. It is a set of points that can retain majority of information about the population. Traditio
会议
Cell migration plays a key role in many physiological processes, such as embryogenesis, wound repair, or metastasis formation. Cell migration is the result of a
会议