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Stripe rust (Puccinia striiformis f.sp.tritici;Pst) and powdery mildew (Blumeria graminis f.sp.tritici;Bgt) are important diseases of wheat (Triticum aestivum) worldwide.Increasingly evidences suggest that long intergenic ncRNAs (lincRNAs) are developmentally regulated and play roles in development and stress responses of plants.However, identification of lincRNAs is still limited in wheat comparing with functional gene expression.