The symmetry analysis of the genome sequence

来源 :第七届全国生物信息学与系统生物学学术大会 | 被引量 : 0次 | 上传用户:qq619609199
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  Over sufficiently long genomic sequence,strand symmetry is a ubiquitous and explicit phenomenon.Despite being studied over two decades,the exact mechanism involved in strand-symmetry has not yet been made completely known.In this study,we want to calculated the multiple orders intra-strand regional reverse-complement symmetry,measured and described symmetry at multiple orders,and analyze an extensive set of genomes,contains prokaryotes and eukaryotes,for example: Escherichia coli and Saccharomyces cerevisiae and Homo sapiens etc.By using a fixed sliding window (10K) method to scan each genome sequence.
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