The karst area accounts for 61.9% of the total area in Guizhou Province, which gives rise to a fragile environment and backward economy. Comparative studies on the element contents of rock and soil and agriculture production in both carbonate area and non-carbonate area have been made to establish factors leading to low output and poor quality of agricultural products in the karst area. The result shows that there is an apparent lack of nutrient elements in carbonate rocks. The trace element contents of carbonate rocks are only 3532.27×10-6, but those of non-carbonate rocks are 10894.21×10-6. The available element contents in culti-vated soil delivered from carbonate rocks are merely 101.4×10-6, but those from non-carbonate rocks are 326.05×10-6. The available element contents and total element contents in cultivated soil delivered from non-carbonate rocks are 3 times higher than those from carbonate rocks. Besides, high-quality agricultural products such as rice, potato and tea are mainly produced in the non-carbonate area. It is indicated that the low output and quality of agricultural products are caused by the above-mentioned low trace element contents and poor agricultural environment. Therefore, a new method of mineral nutrients compensation has been put forward, which is very effective to raise the load-bearing capacity of agricultural environment, agricultural output and quality of agricultural products. The karst area accounts for 61.9% of the total area in Guizhou Province, which gives rise to a fragile environment and backward economy. Comparative studies on the element contents of rock and soil and agriculture production in both carbonate area and non-carbonate area have been made to establish factors leading to low output and poor quality of agricultural products in the karst area. The result shows that there is an apparent lack of nutrient elements in carbonate rocks. The trace element contents of carbonate rocks are only 3532.27 × 10 -6, but those of non-carbonate rocks are 10894.21 × 10-6. The available element contents in culti-vated soil delivered from carbonate rocks are merely 101.4 × 10-6, but those from non-carbonate rocks are 326.05 × 10-6. available element contents and total element contents in cultivated soil delivered from non-carbonate rocks are 3 times higher than those from carbonate rocks. Besides, high-quality agricultural products such as rice, potato and tea ar It is indicated that the low output and quality of agricultural products have caused the above-mentioned low trace element contents and poor agricultural environment. Therefore, a new method of mineral nutrients compensation has been put forward, which is very effective to raise the load-bearing capacity of agricultural environment, agricultural output and quality of agricultural products.