The bonded repair techniques seem to be the most frequent procedures in the aviation maintenance. The achieved composite repaired perforated thin-walled plate is a complex geometry with high numerical analysis cost. The NURBS-based Isogeometric Analysis (IGA) proposes a sen-sible and affordable tool to carry out such geometry analysis. In this context, a well-known tech-nique is to divide the original geometry assembly into number of simple neighbors connected geometries. In the present study the free vibration analysis of the perforated plates repaired on one side with an external bonded composite laminated patch is investigated. A multi-patch geom-etry modeling approach is implemented in line with the first order shear deformation theory of plates. In order to hold the geometry integrity and uniformity, all the degrees of freedom between adjacent geometry patches are completely tied through implementing a Nitsche method. To show the effectiveness and accuracy of the developed formulation, some representative results are extracted and compared with those from literature. The effects of geometrical as well as material parameters including boundary condition, cutout shape, and repair layup on the dynamic response of the repaired perforated plates are then investigated.