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The stable nonlinear transport of the Bose-Einstein condensates through a double barrier potential in a waveguide is studied.By using the direct perturbation method we have obtained a perturbed solution of Gross-Pitaevskii equation.Theoretical analysis reveals that this perturbed solution is a stable periodic solution,which shows that the transport of Bose-Einstein condensed atoms in this system is a stable nonlinear transport.The corresponding numerical results are in good agreement with the theoretical analytical results.