提出一种能识别ＤＮＡ重复顺序的序列装配方案。首先通过预筛选和序列联配来判断两个片段是否真正重叠。然后把来自不同重复区域的所有片段组建成一个重复重叠群（ｒｅｐｅａｔｃｏｎｔｉｇ），而其余片段组建成单拷贝重叠群（ｎｏｎｒｅｐｅａｔｃｏｎｔｉｇ）。接着重复重叠群被拆分成两个重叠群并与其余的单拷贝重叠群连接成全序列片段顺序。最后按照该全序列片段顺序进行序列多重联配，得到全序列。经过８个目标序列库的验证，表明此方案是可行的。 A sequence assembly scheme that can identify the repetitive sequence of DNA is proposed. First, through the pre-screening and sequence alignment to determine whether the two fragments really overlap. All fragments from different repeat regions are then assembled into a repeat contig and the remaining fragments are assembled into a single copy contig. The overlapping contigs are then split into two contigs and linked to the rest of the single copy contigs to complete sequence of fragments. Finally, according to the sequence of the entire sequence sequence multiple match, the full sequence. After eight target sequence library validation, this program is feasible.