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Mining valuable genes and developing powerful molecular markers based on genetic map are efficient strategies for genetic improvement and marker assisted selection (MAS) of crops.In the study, we constructed a high density genetic map of apple based on single nucleotide polymorphism (SNP) developed by restriction-associated DNA sequencing (RADseq).Mapping population comprised 350 F1 individuals derived from the cross of Honey Crisp (HC) x Qinguan (QG).