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Peking duck (Anas platyrhychos) and Muscovy duck (Cairina moschata) are two types of domestic ducks and the most popular meat breeds on the world.Both breeds can cross each other in captivity to produce hybrids,which are sterile.In this study,we sequenced complete mitochondrial genomes of both breeds by long and accurate polymerase chain reaction (LA-PCR) and with primer walking sequence method.