A long-term field experiment (started at 2003) was conducted to determine the effects of different rice cultivation methods on growth characteristics and grain yield of late-season rice under double-rice cropping system in seasonal drought region of southeast China (Yujiang County, Jiangxi Province). The rice cultivation methods included no-tillage and flooded rice cultivation (N-F), no-tillage and non-flooded rice cultivation with straw mulching (N-SM), and no-tillage and non-flooded rice cultivation without straw mulching (N-ZM). There was no significant difference in rice grain yield between the N-SM and N-F treatments. However, the rice grain yields in the N-SM and N-F treatments were significantly higher than that in the N-ZM treatment. The late-season rice plants in the N-SM treatment had significantly higher numbers of effective panicles and total grains per hill compared with those in the N-ZM treatment. The above-ground dry matter of late-season rice was similar between the N-SM and N-F treatments. Compared with the N-F treatment, the N-ZM and N-SM treatments significantly decreased the leaf area at the heading stage. Moreover, the N-SM treatment could significantly increase total root length and root tip number at the grain-filling stage compared with the N-ZM treatment.