The author presents an extension of the Atiyah-Patodi-Singer invariant for unitary representations [2, 3] to the non-unitary case, as well as to the case where the base manifold admits certain finer structures. In particular, when the base manifold has a fibration structure, a Riemann-Roch theorem for these invariants is established by computing the adiabatic limits of the associated η-invariants.